rs6075350 chr20:18507421 G>C
- Sequence
acttcaaacttaaccacagagacc[G/C]actcccaaaccagcaagtgcgtaa
- ASB in cell types
- HepG2 (hepatoblastoma) 22RV1 (prostate carcinoma) sigmoid colon A549 (lung carcinoma)
- ASB for transcription factors
- TYY1_HUMAN ANDR_HUMAN RBM25_HUMAN JUN_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TYY1_HUMAN | 1.81 | -0.39 | 2.29 | n/a | No Hit | |||
| ANDR_HUMAN | -0.16 | 3.05 | 2.00 | n/a | No Hit | |||
| RBM25_HUMAN | 2.00 | -0.88 | 3.00 | n/a | n/a | |||
| JUN_HUMAN | 0.36 | 2.23 | 2.67 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP adiponectin levels, infant head circumference, systolic blood pressure (sbp), urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood