rs60835324 chr17:73192719 G>A
- Sequence
agaagctctgctcctaagggaaag[G/A]gaagacttcagccacagtttcgca
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) RPMI8226 (Plasma cell myeloma) MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- NFIC_HUMAN NCOA6_HUMAN ZN335_HUMAN GABP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFIC_HUMAN | n/a | 3.42 | 2.00 | n/a | No Hit | |||
| NCOA6_HUMAN | n/a | 3.68 | 2.00 | n/a | n/a | |||
| ZN335_HUMAN | n/a | 3.04 | 2.00 | n/a | No Hit | |||
| GABP1_HUMAN | n/a | 4.23 | 2.00 | n/a | n/a | |||
| TYY1_HUMAN | 0.84 | 2.22 | 1.71 | n/a | No Hit |
Items per page:
1 – 5 of 14
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Testis, Thyroid, Whole_Blood