rs6083734 chr20:25077062 G>A
- Sequence
atgatcctcctaactaattacccc[G/A]tgcccggaggtactcatctgtgac
- ASB in cell types
- HEK293 (embryonic kidney)
- ASB for transcription factors
- PRD10_HUMAN ZN335_HUMAN ZN366_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PRD10_HUMAN | -2.15 | 2.95 | 2.00 | n/a | n/a | |||
| ZN335_HUMAN | n/a | 2.82 | 2.00 | n/a | No Hit | |||
| ZN366_HUMAN | n/a | 3.00 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Spleen, Stomach, Thyroid, Whole_Blood