rs6083956 chr20:2652468 C>T
- Sequence
cagctgcagaggccggaaaaggcc[C/T]gctcgcccgcgctcggcaccaccc
- ASB in cell types
- HCASMC (Human coronary artery smooth muscle cells) HCT-116 (colon carcinoma) EA.hy 926 (human umbilical vein endothelial cell line) ME-1 (acute myeloid leukemia )
- ASB for transcription factors
- TCF21_HUMAN HIF1A_HUMAN MED26_HUMAN CDK8_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TCF21_HUMAN | n/a | 3.92 | 2.00 | n/a | n/a | |||
| HIF1A_HUMAN | 2.10 | -0.61 | 2.00 | n/a | No Hit | |||
| MED26_HUMAN | 1.96 | -1.64 | 1.00 | n/a | n/a | |||
| CDK8_HUMAN | 1.79 | -1.01 | 1.00 | n/a | n/a | |||
| TBX21_HUMAN | 1.60 | -0.54 | 1.00 | n/a | No Hit |
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