rs6084591 chr20:4064967 G>A

Sequence
gcctggatcggtgtgtcacagtta[G/A]taacgcctgcgctaattccctggg
ASB in cell types
22RV1 (prostate carcinoma) HCASMC (Human coronary artery smooth muscle cells)
ASB for transcription factors
TCF21_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TCF21_HUMAN 2.30 n/a 1.4·10-31.00 2.00 n/a n/a
ANDR_HUMAN 2.25 0.01 9.7·10-31.00 1.64 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Aorta,  Artery_Tibial,  Brain_Putamen_basal_ganglia,  Esophagus_Muscularis,  Skin_Not_Sun_Exposed_Suprapubic,  Thyroid

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