rs6084660 chr20:4195694 C>T

Sequence
ggaagggctggactggctcccctt[C/T]tcactgtggctgggcagggtaggg
ASB in cell types
RWPE2 LNCaP C4-2B (prostate carcinoma) VCaP (prostate carcinoma)
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Cell type
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
RWPE2 -4.52 2.63 1.000.01 1.50
LNCaP C4-2B (prostate carcinoma) 2.30 n/a 0.021.00 2.00
VCaP (prostate carcinoma) 1.15 -1.15 0.031.00 1.00
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Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd,  hdl cholesterol,  triglycerides change with statins

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