rs6085343 chr20:6006304 G>A

Sequence
ggggccctgcgcggcgccgcttgg[G/A]ctccgggaacgcggccgagtaagc
ASB in cell types
22RV1 (prostate carcinoma) EA.hy 926 (human umbilical vein endothelial cell line)
ASB for transcription factors
HIF1A_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
HIF1A_HUMAN 2.50 -4.91 2.0·10-31.00 2.00 n/a No Hit
ANDR_HUMAN 2.93 -0.28 0.011.00 1.67 n/a No Hit
Items per page:
1 – 2 of 2

Motif analysis

No data available

Genetic associations

GTEx eQTL Brain_Caudate_basal_ganglia,  Liver,  Testis

Download