rs60862279 chr19:39125419 A>G
- Sequence
atgcagcgagaaaatgcaagtaaa[A/G]cacttatcccggtgcctgcctcct
- ASB in cell types
- HEK293 (embryonic kidney) K562 (myelogenous leukemia) GM12878 (female B-cells lymphoblastoid cell line) adult erythroblasts
- ASB for transcription factors
- ZN316_HUMAN ZNF24_HUMAN NCOR1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN316_HUMAN | -0.25 | 3.52 | 2.00 | n/a | n/a | |||
| ZNF24_HUMAN | 0.25 | 1.59 | 2.33 | n/a | n/a | |||
| NCOR1_HUMAN | -2.06 | 2.23 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Hippocampus, Cells_Cultured_fibroblasts, Pancreas, Spleen, Testis, Thyroid, Whole_Blood