rs6087649 chr20:34922859 A>G

Sequence
tcagcctagaattccatccattcc[A/G]tcgatctgctgccaaagaatgtta
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
TEAD3_HUMAN FOXP1_HUMAN FOXA3_HUMAN CEBPA_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TEAD3_HUMAN 3.49 -3.15 1.1·10-71.00 1.00 n/a n/a
FOXP1_HUMAN 2.99 -1.31 3.7·10-41.00 1.25 n/a No Hit
FOXA3_HUMAN 3.12 n/a 9.9·10-41.00 1.00 n/a No Hit
CEBPA_HUMAN 2.43 n/a 2.2·10-31.00 1.50 n/a No Hit
FOXA2_HUMAN 2.75 -0.06 9.9·10-31.00 1.60 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Anterior_cingulate_cortex_BA24,  Brain_Caudate_basal_ganglia,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Brain_Frontal_Cortex_BA9,  Brain_Hippocampus,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Spleen,  Stomach,  Testis,  Thyroid,  Whole_Blood

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