rs6088052 chr20:32976994 T>C
- Sequence
gagtttgcccacatcctgcattca[T/C]gataaacagtttgctgtttgatca
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) Jurkat (T-cells) CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- ESR1_HUMAN KDM6A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 0.99 | -0.07 | 1.62 | n/a | No Hit | |||
| KDM6A_HUMAN | 2.07 | -1.76 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Esophagus_Mucosa, Heart_Left_Ventricle, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood