rs6088214 chr20:33416138 C>T

Sequence
aaaaacaaaggctcttttttagag[C/T]atcggcaagtgacctgtgaatcac
ASB in cell types
erythroid cells GM02610 (Lymphoblastoid Cell Lines) GM02630 (Fanconi anemi)
ASB for transcription factors
STAG1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAG1_HUMAN 0.51 1.03 1.000.01 1.04 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  birth weight,  hdl cholesterol,  height,  triglycerides change with statins
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellum,  Brain_Hippocampus,  Brain_Hypothalamus,  Brain_Putamen_basal_ganglia,  Brain_Spinal_cord_cervical_c-1,  Brain_Substantia_nigra,  Cells_Cultured_fibroblasts,  Colon_Transverse,  Esophagus_Mucosa,  Liver,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Testis,  Thyroid

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