rs6088438 chr20:31514374 A>G
- Sequence
gggcgagcgggcggggagacgtgc[A/G]cgcgcgcgcgcgtgcgtgcaagcg
- ASB in cell types
- MCF7L-P(immortalized breast epithelial cell line) HepG2 (hepatoblastoma) thoracic aorta MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- CREB1_HUMAN GABPA_HUMAN STAT1_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | 1.86 | -0.40 | 1.83 | n/a | No Hit | |||
| GABPA_HUMAN | 2.18 | -2.46 | 2.17 | n/a | No Hit | |||
| STAT1_HUMAN | 2.41 | 0.63 | 2.00 | n/a | No Hit | |||
| FOXK2_HUMAN | 1.92 | -0.51 | 1.25 | n/a | n/a | |||
| MAX_HUMAN | 1.68 | -1.31 | 1.67 | -3.05 | Concordant |
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Motif analysis
