rs6089342 chr20:62286005 G>A

Sequence
cacgcctggccactgacctctgtc[G/A]tctccactctgggtgtccgttaga
ASB in cell types
pulmonary artery endothelial cell HUVEC-C (HUVEC, umbilical vein endothelial cells) liver
ASB for transcription factors
EP300_HUMAN RXRA_HUMAN NOTC1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
EP300_HUMAN -1.69 2.65 1.001.5·10-3 2.00 n/a n/a
RXRA_HUMAN -4.52 2.63 1.000.01 1.50 3.16 Concordant
NOTC1_HUMAN n/a 2.16 1.000.02 2.00 n/a n/a
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Motif analysis

RXRA_HUMAN Concordant
RXRA_HUMAN pic

Genetic associations

GRASP bipolar disorder,  cystatin c in serum,  fasting blood glucose,  microalbuminuria
GTEx eQTL Artery_Aorta,  Artery_Tibial,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Muscle_Skeletal,  Skin_Sun_Exposed_Lower_leg,  Testis,  Whole_Blood

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