rs6089695 chr20:62232970 C>T

Sequence
ctgctcctgaggagaaacccatgg[C/T]gccaccctcaggcccccggtggct
ASB in cell types
CD34+ hematopoietic stem cells-derived proerythroblasts T47D (invasive ductal carcinoma)
ASB for transcription factors
GATA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
GATA1_HUMAN 1.58 -1.32 0.021.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP cystatin c in serum,  hypertension (early onset hypertension),  microalbuminuria
GTEx eQTL Adipose_Subcutaneous,  Artery_Tibial,  Brain_Cerebellum,  Cells_Cultured_fibroblasts,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Liver,  Muscle_Skeletal,  Nerve_Tibial,  Testis,  Whole_Blood

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