rs6089777 chr20:63786382 A>G
- Sequence
gatccaaaggcaggtgctcctggc[A/G]tctgtgggtggaggccacggctgc
- ASB in cell types
- TMD8 (diffuse large B-cell lymphoma) foreskin keratinocyte
- ASB for transcription factors
- SMC1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMC1A_HUMAN | 1.93 | -0.22 | 1.42 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial