rs6090179 chr20:62972000 C>T
- Sequence
tgtttgagtgtgtgtgggagcatg[C/T]gtctgtgtgtgtatttatgagttg
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- FOXA1_HUMAN SRF_HUMAN FOXP1_HUMAN TADBP_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 2.38 | n/a | 1.00 | n/a | No Hit | |||
| SRF_HUMAN | 2.38 | -2.07 | 1.00 | n/a | No Hit | |||
| FOXP1_HUMAN | 2.27 | n/a | 1.00 | n/a | No Hit | |||
| TADBP_HUMAN | 2.42 | -4.33 | 1.50 | n/a | n/a | |||
| NONO_HUMAN | 2.62 | -2.34 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Colon_Transverse, Lung, Muscle_Skeletal, Stomach, Thyroid, Whole_Blood