rs6095726 chr20:49979115 A>G
- Sequence
ccagccttcacctccctgaaaagc[A/G]cgtgccccctgcaccccgcgacga
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) GBM39 (Human brain tumor) NB4 (acute promyelocytic leukemia )
- ASB for transcription factors
- LMBL2_HUMAN MNT_HUMAN MAX_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| LMBL2_HUMAN | 2.32 | n/a | 2.00 | n/a | n/a | |||
| MNT_HUMAN | 1.97 | -2.24 | 1.70 | n/a | n/a | |||
| MAX_HUMAN | 2.03 | -0.54 | 1.50 | -5.48 | Concordant | |||
| CTCF_HUMAN | 0.87 | 0.93 | 1.42 | 1.45 | Weak Discordant | |||
| RAD51_HUMAN | 3.02 | -3.01 | 1.00 | n/a | n/a |
Items per page:
1 – 5 of 14
Motif analysis
