rs6096573 chr20:51767140 C>T
- Sequence
acccttatggttcactccacccgc[C/T]gcgtctcctgttccgagcaactga
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HEK293 (embryonic kidney)
- ASB for transcription factors
- BRD4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BRD4_HUMAN | -0.82 | 1.92 | 2.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP college completion, fasting blood glucose, homa-b, lung function, forced expiratory volume in 1 second (fev1) percent predicted (in asthmatic participants), lung function, forced vital capacity (fvc) (fev1/fvc) percent predicted (in asthmatic participants), lung function, ratio of forced expiratory volume in 1 second (fev1) to forced vital capacity (fvc) (fev1/fvc) (in asthmatic participants), obesity with early age of onset (age >2), rheumatoid arthritis, salmonella-induced pyroptosis, total cholesterol change with statins
GTEx eQTL Adrenal_Gland, Artery_Aorta, Artery_Tibial, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood