rs60972473 chr17:43361259 C>T
- Sequence
gtaacagacgctaagcgcccaatg[C/T]gaacaaaactcccgcttcgaaaac
- ASB in cell types
- IMR90 (lung fibroblasts) GM18505 (female B-cells Lymphoblastoid Cell Lines) GM19240 (B cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- HIRA_HUMAN STAG1_HUMAN HMGB2_HUMAN EP300_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HIRA_HUMAN | -1.03 | 2.18 | 1.79 | n/a | n/a | |||
| STAG1_HUMAN | -0.20 | 2.56 | 2.67 | n/a | n/a | |||
| HMGB2_HUMAN | -1.10 | 2.63 | 1.00 | n/a | n/a | |||
| EP300_HUMAN | -4.10 | 2.30 | 1.25 | n/a | n/a | |||
| LMNB1_HUMAN | -1.90 | 2.07 | 1.00 | n/a | n/a |
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