rs6099360 chr20:56936846 T>C
- Sequence
aggtggccctctcagtttcttttg[T/C]aatagctgtactgtcaacagaggc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) T47D (invasive ductal carcinoma) MCF7L-P(immortalized breast epithelial cell line) MCF7 WS8 cells
- ASB for transcription factors
- ESR1_HUMAN FOXA1_HUMAN CEBPB_HUMAN ETV2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 0.32 | 1.93 | 3.25 | n/a | No Hit | |||
| FOXA1_HUMAN | -0.13 | 1.93 | 3.25 | n/a | No Hit | |||
| CEBPB_HUMAN | n/a | 4.13 | 2.00 | 3.82 | Concordant | |||
| ETV2_HUMAN | n/a | 3.52 | 3.00 | n/a | No Hit | |||
| TLE3_HUMAN | n/a | 2.78 | 3.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, bipolar disorder, birth weight, ldl cholesterol, tetrology of fallot, total cholesterol change with statins