rs6103072 chr20:36384083 A>G

Sequence
agtaactagctagaaaaaaaaaga[A/G]gctttcattgccacctcagcatgg
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) LNCaP (prostate carcinoma) HCT-116 (colon carcinoma) HL-60 (acute myeloid leukemia)
ASB for transcription factors
REST_HUMAN COT1_HUMAN MTOR_HUMAN ESR2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
REST_HUMAN 2.10 -0.02 4.6·10-171.00 1.19 n/a No Hit
COT1_HUMAN 3.19 -2.85 1.1·10-61.00 1.00 n/a No Hit
MTOR_HUMAN 2.11 0.00 0.031.00 1.00 n/a n/a
ESR2_HUMAN 2.58 n/a 0.041.00 3.00 n/a No Hit
HNF4A_HUMAN 2.41 n/a 0.051.00 3.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP brain atrophy,  hypertension (early onset hypertension),  mitral annular calcium,  refractive error,  salmonella-induced pyroptosis,  stabilized warfarin dose,  triglycerides change with statins
GTEx eQTL Adipose_Visceral_Omentum,  Cells_Cultured_fibroblasts

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