rs6103572 chr20:44029222 T>C
- Sequence
ttttgaccagtggttccctctcaa[T/C]tcttcacaaagatacagaaagata
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- COT1_HUMAN ELF1_HUMAN STAG1_HUMAN BHE40_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | -2.17 | 2.55 | 1.00 | 0.92 | Weak Concordant | |||
| ELF1_HUMAN | -2.69 | 2.77 | 1.00 | n/a | No Hit | |||
| STAG1_HUMAN | n/a | 1.99 | 1.25 | n/a | n/a | |||
| BHE40_HUMAN | -4.15 | 2.35 | 1.50 | n/a | No Hit | |||
| IKZF1_HUMAN | -1.06 | 1.48 | 1.25 | n/a | No Hit |
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Motif analysis
