rs6103574 chr20:44029344 T>G
- Sequence
tttcaggcactctgtaaccgtggg[T/G]aagaggatgtggtgaggccagccc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) CTV-1 (Adult T acute lymphoblastic leukemia) MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- COT1_HUMAN ETS1_HUMAN STAG1_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| COT1_HUMAN | -2.25 | 2.63 | 1.00 | n/a | No Hit | |||
| ETS1_HUMAN | -4.23 | 2.51 | 1.50 | 1.71 | Weak Concordant | |||
| STAG1_HUMAN | -0.90 | 1.84 | 1.17 | n/a | n/a | |||
| IKZF1_HUMAN | -1.25 | 1.69 | 1.25 | n/a | No Hit | |||
| CDK9_HUMAN | n/a | 2.19 | 1.00 | n/a | n/a |
Items per page:
1 – 5 of 7
Motif analysis
