rs6105630 chr20:16574902 G>C
- Sequence
tttgaccaacgggtggcaggaaca[G/C]ccggagcaggatattaaggagcgg
- ASB in cell types
- HepG2 (hepatoblastoma) BIN-67 (Ovarian small cell carcinoma, hypercalcemic type) SEM (childhood B acute lymphoblastic leukemia) CD14+ monocytes
- ASB for transcription factors
- REQU_HUMAN RBM25_HUMAN TYY1_HUMAN ZN341_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| REQU_HUMAN | -0.77 | 3.04 | 2.00 | n/a | n/a | |||
| RBM25_HUMAN | 1.15 | -0.35 | 1.00 | n/a | n/a | |||
| TYY1_HUMAN | 1.95 | 0.32 | 1.20 | n/a | No Hit | |||
| ZN341_HUMAN | 2.87 | -4.94 | 1.50 | -4.22 | Concordant | |||
| ERG_HUMAN | 0.09 | 2.30 | 1.11 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Cells_Cultured_fibroblasts, Colon_Transverse, Heart_Left_Ventricle, Pancreas, Testis, Thyroid