rs6108246 chr20:9051732 G>T
- Sequence
cccagtgatttcacaaaggtttat[G/T]actcatagaaaatctgctatgggc
- ASB in cell types
- HCT-116 (colon carcinoma) BEAS-2B (bronchial epithelium) HCASMC (Human coronary artery smooth muscle cells)
- ASB for transcription factors
- GCR_HUMAN JUN_HUMAN FOSL1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.78 | -0.14 | 2.00 | n/a | No Hit | |||
| JUN_HUMAN | 0.74 | -0.13 | 1.92 | -4.53 | Concordant | |||
| FOSL1_HUMAN | 1.78 | -1.22 | 1.00 | -3.35 | Concordant |
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Motif analysis
