rs6109233 chr20:12030723 A>G
- Sequence
ttactgagccaatatgttttttct[A/G]gttaacatttttctgtagtgtttt
- ASB in cell types
- LNCaP (prostate carcinoma) 22RV1 (prostate carcinoma) LNCaP95
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.30 | 0.03 | 1.52 | -1.56 | Weak Concordant | |||
| FOXA1_HUMAN | 1.37 | -0.20 | 1.45 | 0.73 | Weak Discordant |
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Motif analysis
