rs6111552 chr20:17505030 G>C

Sequence
ctaagtgactttaatgagaaatga[G/C]acatgggcggttcccactttgcaa
ASB in cell types
neutrophils from periferal blood MS-1 (Small cell lung carcinoma) adrenal gland
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.65 0.38 3.3·10-51.00 1.16 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP hdl cholesterol,  homa-b
GTEx eQTL Whole_Blood

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