rs6115142 chr20:25310749 A>G
- Sequence
aagaagactgacagggacagacag[A/G]caggcacagagacagggacaggag
- ASB in cell types
- CD14+ monocytes
- ASB for transcription factors
- FOXK2_HUMAN STAT1_HUMAN YBOX1_HUMAN E4F1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 2.54 | -4.45 | 1.50 | n/a | n/a | |||
| STAT1_HUMAN | 2.14 | -0.82 | 1.50 | n/a | No Hit | |||
| YBOX1_HUMAN | -2.52 | 2.62 | 1.00 | n/a | n/a | |||
| E4F1_HUMAN | 2.57 | n/a | 1.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood