rs6115306 chr20:2652734 G>A
- Sequence
ggcctgcgttcgggccgcagacag[G/A]gcctgggcctgggcctgggcctgc
- ASB in cell types
- MOLT-4 (Adult T acute lymphoblastic leukemia) HCT-116 (colon carcinoma) hNSC (neural stem cells) SUM159PT (Triple negative breast cancer)
- ASB for transcription factors
- SPT5H_HUMAN ZFX_HUMAN BRD2_HUMAN BRD4_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPT5H_HUMAN | 4.18 | -0.39 | 1.67 | n/a | n/a | |||
| ZFX_HUMAN | 1.87 | 0.95 | 1.00 | -4.49 | Concordant | |||
| BRD2_HUMAN | 0.34 | 2.69 | 1.00 | n/a | n/a | |||
| BRD4_HUMAN | 2.09 | 0.17 | 1.80 | n/a | n/a | |||
| CHD8_HUMAN | 1.71 | 3.95 | 1.00 | n/a | n/a |
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Motif analysis
