rs6115307 chr20:2652758 C>G
- Sequence
ggcctgggcctgggcctgggcctg[C/G]gcctgcgcctgcgcctgccctggg
- ASB in cell types
- Kelly (neuroblastoma) hTERT-HME1(Telomerase immortalized cell line) tibial nerve keratinocytes
- ASB for transcription factors
- MYCN_HUMAN BRCA2_HUMAN CTCF_HUMAN SNAI2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MYCN_HUMAN | 2.44 | -2.13 | 1.00 | n/a | No Hit | |||
| BRCA2_HUMAN | 2.00 | -1.03 | 1.00 | n/a | n/a | |||
| CTCF_HUMAN | 1.47 | -0.38 | 1.06 | n/a | No Hit | |||
| SNAI2_HUMAN | 1.76 | -0.63 | 1.00 | n/a | No Hit | |||
| STAG1_HUMAN | 1.38 | -0.07 | 1.07 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Brain_Cerebellum, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Muscle_Skeletal, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood