rs6116190 chr20:4085462 G>A
- Sequence
ccacagccccctgccaacccttgg[G/A]cgtggtatttttccagccttaagt
- ASB in cell types
- foreskin keratinocyte HepG2 (hepatoblastoma) erythroid progenitors primary human epidermal keratinocytes
- ASB for transcription factors
- SMC1A_HUMAN TIF1B_HUMAN KDM6A_HUMAN KAT8_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMC1A_HUMAN | 2.10 | 0.10 | 1.40 | n/a | n/a | |||
| TIF1B_HUMAN | 2.41 | -1.65 | 2.00 | n/a | n/a | |||
| KDM6A_HUMAN | 2.04 | n/a | 3.00 | n/a | n/a | |||
| KAT8_HUMAN | 2.59 | -2.46 | 1.00 | n/a | n/a | |||
| ZF64B_HUMAN | -1.44 | 1.77 | 1.00 | n/a | n/a |
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