rs6116673 chr20:5169221 G>A
- Sequence
ctgccccacctggcctctgttccc[G/A]gccctcgggattgaaagggaagga
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells lymphoblastoid cell line) CTV-1 (Adult T acute lymphoblastic leukemia) NALM-6 (adult B acute lymphoblastic leukemia)
- ASB for transcription factors
- IKZF2_HUMAN GLIS1_HUMAN ZN600_HUMAN CDK9_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | -1.38 | 1.53 | 1.00 | n/a | n/a | |||
| GLIS1_HUMAN | -1.02 | 1.48 | 2.00 | n/a | n/a | |||
| ZN600_HUMAN | -4.84 | 2.74 | 2.00 | n/a | n/a | |||
| CDK9_HUMAN | -0.50 | 1.80 | 1.00 | n/a | n/a |
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