rs6123352 chr20:54065754 C>G

Sequence
tgcctgggctcccctctggctcac[C/G]ctggccatatgcataagccctggc
ASB in cell types
K562 (myelogenous leukemia) adult erythroblasts
ASB for transcription factors
NCOR1_HUMAN KDM6A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NCOR1_HUMAN 1.64 -1.03 0.011.00 2.33 n/a n/a
KDM6A_HUMAN 2.58 n/a 0.031.00 3.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP birth weight,  fasting blood glucose,  fasting insulin,  hdl cholesterol,  homa-ir
GTEx eQTL Esophagus_Mucosa,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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