rs6123845 chr20:59032613 C>T

Sequence
cgggggcaagaaggccggggtgtc[C/T]ccgctcgctaaggaccactgagcc
ASB in cell types
K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) HEK293 (embryonic kidney) BEAS-2B (bronchial epithelium)
ASB for transcription factors
TYY1_HUMAN CTCF_HUMAN GCR_HUMAN PKNX1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TYY1_HUMAN -0.36 1.80 0.883.3·10-3 2.80 n/a No Hit
CTCF_HUMAN 0.67 1.51 0.769.6·10-3 1.30 n/a No Hit
GCR_HUMAN 0.84 -0.10 0.011.00 2.00 n/a No Hit
PKNX1_HUMAN -0.07 1.28 1.000.04 2.12 n/a No Hit
EP300_HUMAN 0.95 -0.28 0.051.00 1.36 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Nucleus_accumbens_basal_ganglia,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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