rs6124220 chr20:40251603 C>T
- Sequence
ccaagcagggcaatgaagggtgaa[C/T]gtgaagctaagaggcaaaagttga
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) RH4 (alveolar rhabdomyosarcoma) MCF7L-P(immortalized breast epithelial cell line) SK-N-SH (neuroblastoma)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.48 | 0.81 | 1.41 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, height, ldl cholesterol, maternal transmission distortion, microalbuminuria, rheumatoid arthritis, total cholesterol, transmission distortion, triglycerides