rs6124314 chr20:41086577 C>T
- Sequence
ctctttttgggatccaggcaagtg[C/T]gctgggtccagccttgtatgtgta
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- NRF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | 2.10 | -1.19 | 2.00 | -3.69 | Concordant |
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Motif analysis
Genetic associations
GRASP body mass index (bmi), infant head circumference, ldl cholesterol, total cholesterol, triglycerides, waist hip ratio
GTEx eQTL Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cortex, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Lung, Muscle_Skeletal, Pancreas, Pituitary, Stomach