rs6125042 chr20:47557583 A>G
- Sequence
ccatctgtaaataggtgcatatat[A/G]caaattgagaatgtacatattttc
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- NFXL1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NFXL1_HUMAN | n/a | 3.12 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP hypertension (early onset hypertension), ldl cholesterol change with statins, parkinsons disease (pd), total cholesterol change with statins, variant creutzfeldt-jakob disease