rs6125085 chr20:47715830 T>C
- Sequence
tgacctcaagtgatccacccgcct[T/C]ggcctcccaaagtgctgggattac
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MCF-7 C4-12 (invasive breast ductal carcinoma)
- ASB for transcription factors
- ZFX_HUMAN ZBT40_HUMAN SIX4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | -0.86 | 2.14 | 3.50 | 2.17 | Concordant | |||
| ZBT40_HUMAN | n/a | 2.83 | 6.00 | n/a | n/a | |||
| SIX4_HUMAN | n/a | 2.91 | 6.00 | n/a | n/a |
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Motif analysis
