rs6125617 chr20:37615989 G>A
- Sequence
tagtaacaggttggtaattccctg[G/A]gcactatgtctgtaattccagcag
- ASB in cell types
- VCaP (prostate carcinoma) T cells from peripheral blood GM17942 (lymphoblastoid cell) MCF7L-P(immortalized breast epithelial cell line)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.16 | 0.24 | 1.85 | n/a | No Hit | |||
| STAG1_HUMAN | 1.71 | 0.22 | 1.81 | n/a | n/a | |||
| RAD21_HUMAN | 1.91 | -0.10 | 1.72 | n/a | n/a |
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