rs6125618 chr20:37615998 T>C
- Sequence
gttggtaattccctgggcactatg[T/C]ctgtaattccagcagttgccgcta
- ASB in cell types
- VCaP (prostate carcinoma) GM17942 (lymphoblastoid cell) THP-1 (acute monocytic leukemia) neural cell
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.92 | 0.41 | 1.82 | n/a | No Hit | |||
| STAG1_HUMAN | 1.84 | -2.35 | 1.81 | n/a | n/a | |||
| RAD21_HUMAN | 1.80 | -0.32 | 1.65 | n/a | n/a | |||
| SMC3_HUMAN | 1.67 | -2.77 | 1.50 | n/a | n/a | |||
| OTX2_HUMAN | 2.41 | -2.37 | 1.33 | n/a | No Hit |
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