rs6125619 chr20:37616034 G>T
- Sequence
gcagttgccgctaggaggacagca[G/T]caacttcaaaggtagacgactcag
- ASB in cell types
- VCaP (prostate carcinoma) GM12878 (female B-cells lymphoblastoid cell line) GM17942 (lymphoblastoid cell) neural cell
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN TRI22_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.76 | 0.43 | 1.71 | n/a | No Hit | |||
| STAG1_HUMAN | 2.03 | -0.62 | 1.81 | n/a | n/a | |||
| RAD21_HUMAN | 2.08 | 0.21 | 1.19 | n/a | n/a | |||
| TRI22_HUMAN | 2.33 | -1.11 | 1.00 | n/a | n/a | |||
| SMC3_HUMAN | 1.84 | -3.00 | 1.50 | n/a | n/a |
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