rs6125961 chr20:50267587 C>A

Sequence
tctggcacccaatttaggaccccg[C/A]ggggaggcccaagccccgggggtg
ASB in cell types
HCC-1599(ductal breast carcinoma)
ASB for transcription factors
SUH_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SUH_HUMAN 2.71 0.96 0.011.00 1.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

EMBL-EBI granulocyte percentage of myeloid white cells,  monocyte count
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Minor_Salivary_Gland,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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