rs61318917 chr1:39883661 G>A
- Sequence
gtgtcagaacctcaactacccgcc[G/A]tctttttttttttttcttcttatt
- ASB in cell types
- K562 (myelogenous leukemia) MOLT-4 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- RFX1_HUMAN NFRKB_HUMAN NRF1_HUMAN PKNX1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFX1_HUMAN | -0.85 | 1.04 | 1.00 | n/a | No Hit | |||
| NFRKB_HUMAN | n/a | 3.27 | 1.00 | n/a | n/a | |||
| NRF1_HUMAN | -0.99 | 1.23 | 1.44 | n/a | No Hit | |||
| PKNX1_HUMAN | -4.34 | 2.51 | 1.50 | n/a | No Hit | |||
| ZN592_HUMAN | -2.41 | 2.72 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood