rs6132109 chr20:1946869 A>G

Sequence
aacagcgaagtccaagattaccca[A/G]ctggttattactagaggcaggatt
ASB in cell types
CD14+ monocytes MDM(monocyte derived macrophages) macrophages
ASB for transcription factors
STAT1_HUMAN TF65_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
STAT1_HUMAN 2.24 -1.09 1.2·10-41.00 3.00 n/a No Hit
TF65_HUMAN 2.43 n/a 2.1·10-31.00 3.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP bipolar disorder,  hdl cholesterol change with statins,  neuroblastoma (brain cancer),  tetrology of fallot

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