rs6138046 chr20:23723751 G>C

Sequence
ggggcagagaaaccaaaagctaca[G/C]ggcaattcctttgcccacagccac
ASB in cell types
MCF7L-P(immortalized breast epithelial cell line) Jurkat (T-cells)
ASB for transcription factors
CTCF_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 1.35 -0.13 1.3·10-81.00 1.45 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP cystatin c in serum,  ldl cholesterol,  parkinsons disease,  refractive error,  serum cystatin c estimated glomerular filtration rate (egfr)
GTEx eQTL Artery_Coronary,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg

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