rs6138080 chr20:23782582 T>C
- Sequence
ccaccagagggaagcactcaccca[T/C]ggatgaccagccctttgggtgcct
- ASB in cell types
- GM12892 (female B-cells lymphoblastoid cell line) SK-N-SH (neuroblastoma) K562 (myelogenous leukemia) 2588 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 3.20 | -0.31 | 1.85 | n/a | No Hit | |||
| STAG1_HUMAN | 2.45 | -1.01 | 1.28 | n/a | n/a | |||
| RAD21_HUMAN | 1.78 | -1.48 | 1.63 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Esophagus_Muscularis, Lung, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach