rs61395826 chr3:53197279 C>T
- Sequence
tttataagggacattccccgcccc[C/T]cccaacttcactctgcacttctcc
- ASB in cell types
- HEK293 (embryonic kidney) GM02255 (Lymphoblastoid Cell Lines) 22RV1 (prostate carcinoma) CD14+ monocytes
- ASB for transcription factors
- KLF16_HUMAN STAT1_HUMAN PATZ1_HUMAN ZN600_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KLF16_HUMAN | -3.73 | 3.41 | 1.00 | n/a | n/a | |||
| STAT1_HUMAN | 2.27 | n/a | 3.00 | n/a | No Hit | |||
| PATZ1_HUMAN | 2.20 | -1.93 | 1.00 | -1.13 | Weak Concordant | |||
| ZN600_HUMAN | -2.48 | 2.73 | 1.00 | n/a | n/a | |||
| SP2_HUMAN | -3.63 | 2.33 | 1.33 | -1.77 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Artery_Aorta, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg