rs61395826 chr3:53197279 C>T

Sequence
tttataagggacattccccgcccc[C/T]cccaacttcactctgcacttctcc
ASB in cell types
HEK293 (embryonic kidney) GM02255 (Lymphoblastoid Cell Lines) 22RV1 (prostate carcinoma) CD14+ monocytes
ASB for transcription factors
KLF16_HUMAN STAT1_HUMAN PATZ1_HUMAN ZN600_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
KLF16_HUMAN -3.73 3.41 1.003.1·10-4 1.00 n/a n/a
STAT1_HUMAN 2.27 n/a 9.8·10-41.00 3.00 n/a No Hit
PATZ1_HUMAN 2.20 -1.93 6.9·10-31.00 1.00 -1.13 Weak Concordant
ZN600_HUMAN -2.48 2.73 1.000.01 1.00 n/a n/a
SP2_HUMAN -3.63 2.33 1.000.02 1.33 -1.77 Weak Discordant
Items per page:
1 – 5 of 6

Motif analysis

ZN341_HUMAN Concordant
ZN341_HUMAN pic

Genetic associations

GTEx eQTL Artery_Aorta,  Cells_EBV-transformed_lymphocytes,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

Download