rs6141803 chr20:32752550 T>C

Sequence
ctgtgtatatggacgtcgtgaaga[T/C]tggaggctgagggccctgaccaga
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
ARI1B_HUMAN KDM1A_HUMAN HTF4_HUMAN NCOR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ARI1B_HUMAN 0.64 n/a 2.4·10-71.00 2.00 n/a n/a
KDM1A_HUMAN 0.92 -2.37 1.9·10-51.00 2.00 n/a n/a
HTF4_HUMAN 0.65 n/a 1.8·10-31.00 2.00 n/a No Hit
NCOR1_HUMAN 0.68 n/a 5.7·10-31.00 2.00 n/a n/a
HDAC2_HUMAN 0.75 n/a 9.9·10-31.00 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP parkinsons disease,  rheumatoid arthritis,  systolic blood pressure (sbp)
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Brain_Cerebellum,  Brain_Hypothalamus,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Minor_Salivary_Gland,  Muscle_Skeletal,  Nerve_Tibial,  Pancreas,  Pituitary,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Thyroid,  Whole_Blood

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