rs6142696 chr20:61981178 A>G
- Sequence
ttccccatgtggccagcagacggc[A/G]ccaggaaaccacagatgtggcaaa
- ASB in cell types
- THP-1 (acute monocytic leukemia) MOLM-13(acute monocytic leukemia(AML), Homo sapiens) HUES64 (embryonic stem cells) TTC-1240 (Rhabdoid tumor of the kidney)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN PRDM9_HUMAN STAG1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.25 | 2.46 | 1.55 | 0.70 | Weak Concordant | |||
| RAD21_HUMAN | -0.00 | 1.85 | 1.10 | n/a | n/a | |||
| PRDM9_HUMAN | -5.17 | 3.09 | 2.00 | n/a | n/a | |||
| STAG1_HUMAN | -1.61 | 2.18 | 1.00 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
