rs61665022 chr12:120302559 C>G

Sequence
gggaaaccggactgtgtgtttgtt[C/G]agctgttcacgttttgctgtggaa
ASB in cell types
HepG2 (hepatoblastoma) HAEC (human aortic endothelial cells) MOLM14 (Adult acute myeloid leukemia)
ASB for transcription factors
TGIF2_HUMAN ARI4B_HUMAN SP130_HUMAN CDK8_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TGIF2_HUMAN 3.21 -3.35 2.9·10-41.00 1.00 n/a n/a
ARI4B_HUMAN 3.03 -2.69 3.5·10-41.00 1.00 n/a n/a
SP130_HUMAN 2.54 -2.25 4.1·10-41.00 1.00 n/a n/a
CDK8_HUMAN 2.68 -1.59 6.3·10-41.00 2.00 n/a n/a
FOXA3_HUMAN 3.02 -5.02 1.4·10-31.00 1.50 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Artery_Aorta,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Cells_EBV-transformed_lymphocytes,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Liver,  Lung,  Nerve_Tibial,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid,  Whole_Blood

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